SNP Profiles of ICS 16 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	AC	CT	AC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT
1._GC-08-067-1-89	AA	AC	CT	AC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT
2._GC-08-067-1-89	AA	AC	CT	AC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT
3._GC-08-067-1-89	AA	AC	CT	AC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT
4._GC-08-067-1-89	AA	AC	CT	AC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT
5._GC-08-067-1-89	AA	AC	CT	AC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT
6._GC-08-067-1-89	AA	AC	CT	AC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT
7._GC-08-067-1-89	AA	AC	CT	AC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT
8._GC-08-067-1-89	AA	AC	CT	AC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT
9._GC-08-067-1-89	AA	AC	CT	AC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT
10._ICS_16	AA	AC	CT	AC	_	_	_	_	CC	CC	GG	_	CC	_
11._ICS_16	AA	AC	CT	AC	_	_	_	_	CC	CC	GG	_	CC	_
12._ICS_16	AA	AC	CT	AC	_	_	_	_	CC	CC	GG	_	CC	_
13._ICS_16	AA	AC	CT	AC	_	_	_	_	CC	CC	GG	_	CC	_
14._ICS_16	AA	AC	CT	AC	_	_	_	_	CC	CC	GG	_	CC	_
15._ICS_16	AA	AC	CT	AC	_	_	_	_	CC	CC	GG	_	CC	_
16._ICS_16	AA	AC	CT	AC	_	_	_	_	CC	CC	GG	_	CC	_
17._ICS_16	AA	AC	CT	AC	_	_	_	_	CC	CC	GG	_	CC	_
18._ICS_16	AA	AC	CT	AC	_	_	_	_	CC	CC	GG	_	CC	_
19._ICS_16	AA	AC	CT	AC	_	_	_	_	CC	CC	GG	_	CC	_
20._ICS_16	AA	AA	CC	CC	_	_	_	_	CT	CT	GG	_	CC	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	AA	GG	CG	CC	TT	AA	TT	GG	AA	AA	CC	GG
1._GC-08-067-1-89	AA	CC	AA	GG	CG	CC	TT	AA	TT	GG	AA	AA	CC	GG
2._GC-08-067-1-89	AA	CC	AA	GG	CG	CC	TT	AA	TT	GG	AA	AA	CC	GG
3._GC-08-067-1-89	AA	CC	AA	GG	CG	CC	TT	AA	TT	GG	AA	AA	CC	GG
4._GC-08-067-1-89	AA	CC	AA	GG	CG	CC	TT	AA	TT	GG	AA	AA	CC	GG
5._GC-08-067-1-89	AA	CC	AA	GG	CG	CC	TT	AA	TT	GG	AA	AA	CC	GG
6._GC-08-067-1-89	AA	CC	AA	GG	CG	CC	TT	AA	TT	GG	AA	AA	CC	GG
7._GC-08-067-1-89	AA	CC	AA	GG	CG	CC	TT	AA	TT	GG	AA	AA	CC	GG
8._GC-08-067-1-89	AA	CC	AA	GG	CG	_	TT	AA	TT	GG	AA	AA	CC	GG
9._GC-08-067-1-89	AA	CC	AA	GG	CG	CC	TT	AA	TT	GG	AA	AA	CC	GG
10._ICS_16	_	_	_	GG	_	_	_	_	_	_	AA	AA	_	GG
11._ICS_16	_	_	_	GG	_	_	_	_	_	_	AA	AA	_	GG
12._ICS_16	_	_	_	GG	_	_	_	_	_	_	AA	AA	_	GG
13._ICS_16	_	_	_	GG	_	_	_	_	_	_	AA	AA	_	GG
14._ICS_16	_	_	_	GG	_	_	_	_	_	_	AA	AA	_	GG
15._ICS_16	_	_	_	GG	_	_	_	_	_	_	AA	AA	_	GG
16._ICS_16	_	_	_	GG	_	_	_	_	_	_	AA	AA	_	GG
17._ICS_16	_	_	_	GG	_	_	_	_	_	_	AA	AA	_	GG
18._ICS_16	_	_	_	GG	_	_	_	_	_	_	AA	AA	_	GG
19._ICS_16	_	_	_	GG	_	_	_	_	_	_	AA	AA	_	GG
20._ICS_16	_	_	_	AA	_	_	_	_	_	_	AT	TT	_	CG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AA	TT	GT	GG	GG	CC	AG	GG	GG	GT	GG	CT	GG	CC
1._GC-08-067-1-89	AA	TT	GT	GG	GG	CC	AG	GG	GG	GT	GG	CT	GG	CC
2._GC-08-067-1-89	AA	TT	GT	GG	GG	CC	AG	GG	GG	GT	GG	CT	GG	CC
3._GC-08-067-1-89	AA	TT	GT	GG	GG	CC	AG	GG	GG	GT	GG	CT	GG	CC
4._GC-08-067-1-89	AA	TT	GT	GG	GG	CC	AG	GG	GG	GT	GG	CT	GG	CC
5._GC-08-067-1-89	AA	TT	GT	GG	GG	CC	AG	GG	GG	GT	GG	CT	GG	CC
6._GC-08-067-1-89	AA	TT	GT	GG	GG	CC	AG	GG	GG	GT	GG	CT	GG	CC
7._GC-08-067-1-89	AA	TT	GT	GG	GG	CC	AG	GG	GG	GT	GG	CT	GG	CC
8._GC-08-067-1-89	AA	TT	GT	GG	GG	CC	AG	GG	GG	GT	GG	CT	GG	CC
9._GC-08-067-1-89	AA	TT	GT	GG	GG	CC	AG	GG	GG	GT	GG	CT	GG	CC
10._ICS_16	AA	_	_	_	GG	_	AG	GG	_	_	GG	_	_	_
11._ICS_16	AA	_	_	_	GG	_	AG	GG	_	_	GG	_	_	_
12._ICS_16	AA	_	_	_	GG	_	AG	GG	_	_	GG	_	_	_
13._ICS_16	AA	_	_	_	GG	_	AG	GG	_	_	GG	_	_	_
14._ICS_16	AA	_	_	_	GG	_	AG	GG	_	_	GG	_	_	_
15._ICS_16	AA	_	_	_	GG	_	AG	GG	_	_	GG	_	_	_
16._ICS_16	AA	_	_	_	GG	_	AG	GG	_	_	GG	_	_	_
17._ICS_16	AA	_	_	_	GG	_	AG	GG	_	_	GG	_	_	_
18._ICS_16	AA	_	_	_	GG	_	AG	GG	_	_	GG	_	_	_
19._ICS_16	AA	_	_	_	GG	_	AG	GG	_	_	GG	_	_	_
20._ICS_16	AA	_	_	_	GG	_	AA	GT	_	_	AA	_	_	_

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	GG	TT	TT	AA	GG	AA	CC	CC	GG	AG	GG	TT	CC	CT
1._GC-08-067-1-89	GG	TT	TT	AA	GG	AA	CC	CC	GG	AG	GG	TT	CC	CT
2._GC-08-067-1-89	GG	TT	TT	AA	GG	AA	CC	CC	GG	AG	GG	TT	CC	CT
3._GC-08-067-1-89	GG	TT	TT	AA	GG	AA	CC	CC	GG	AG	GG	TT	CC	CT
4._GC-08-067-1-89	GG	TT	TT	AA	GG	AA	CC	CC	GG	AG	GG	TT	CC	CT
5._GC-08-067-1-89	GG	TT	TT	AA	GG	AA	CC	CC	GG	AG	GG	TT	CC	CT
6._GC-08-067-1-89	GG	TT	TT	AA	GG	AA	CC	CC	GG	AG	GG	TT	CC	CT
7._GC-08-067-1-89	GG	TT	TT	AA	GG	AA	CC	CC	GG	AG	GG	TT	CC	CT
8._GC-08-067-1-89	GG	TT	TT	AA	GG	AA	CC	CC	GG	AG	GG	TT	CC	CT
9._GC-08-067-1-89	GG	TT	TT	AA	GG	AA	CC	CC	GG	AG	GG	TT	CC	CT
10._ICS_16	_	_	TT	_	_	_	_	_	_	_	_	_	CC	CT
11._ICS_16	_	_	TT	_	_	_	_	_	_	_	_	_	CC	CT
12._ICS_16	_	_	TT	_	_	_	_	_	_	_	_	_	CC	CT
13._ICS_16	_	_	TT	_	_	_	_	_	_	_	_	_	CC	CT
14._ICS_16	_	_	TT	_	_	_	_	_	_	_	_	_	CC	CT
15._ICS_16	_	_	TT	_	_	_	_	_	_	_	_	_	CC	CT
16._ICS_16	_	_	TT	_	_	_	_	_	_	_	_	_	CC	CT
17._ICS_16	_	_	TT	_	_	_	_	_	_	_	_	_	CC	CT
18._ICS_16	_	_	TT	_	_	_	_	_	_	_	_	_	CC	CT
19._ICS_16	_	_	TT	_	_	_	_	_	_	_	_	_	CC	CT
20._ICS_16	_	_	CC	_	_	_	_	_	_	_	_	_	CC	CT

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	TT	CC	CC	CC	AA	GG	GG	AC	GG	TT	GG	GG	CT	CC
1._GC-08-067-1-89	TT	CC	CC	CC	AA	GG	GG	AC	GG	TT	GG	GG	CT	CC
2._GC-08-067-1-89	TT	CC	CC	CC	AA	GG	GG	AC	GG	TT	GG	GG	CT	CC
3._GC-08-067-1-89	TT	CC	CC	CC	AA	GG	GG	AC	GG	TT	GG	GG	CT	CC
4._GC-08-067-1-89	TT	CC	CC	CC	AA	GG	GG	AC	GG	TT	GG	GG	CT	CC
5._GC-08-067-1-89	TT	CC	CC	CC	AA	GG	GG	AC	GG	TT	GG	GG	CT	CC
6._GC-08-067-1-89	TT	CC	CC	CC	AA	GG	GG	AC	GG	TT	GG	GG	CT	CC
7._GC-08-067-1-89	TT	CC	CC	CC	AA	GG	GG	AC	GG	TT	GG	GG	CT	CC
8._GC-08-067-1-89	TT	CC	CC	CC	AA	GG	GG	AC	GG	TT	GG	GG	CT	CC
9._GC-08-067-1-89	TT	CC	CC	CC	AA	GG	GG	AC	GG	TT	GG	GG	CT	CC
10._ICS_16	_	CC	_	CC	AA	GG	_	AC	GG	TT	GG	_	_	_
11._ICS_16	_	CC	_	CC	AA	GG	_	AC	GG	TT	GG	_	_	_
12._ICS_16	_	CC	_	CC	AA	GG	_	AC	GG	TT	GG	_	_	_
13._ICS_16	_	CC	_	CC	AA	GG	_	AC	GG	TT	GG	_	_	_
14._ICS_16	_	CC	_	CC	AA	GG	_	AC	GG	TT	GG	_	_	_
15._ICS_16	_	CC	_	CC	AA	GG	_	AC	GG	TT	GG	_	_	_
16._ICS_16	_	CC	_	CC	AA	GG	_	AC	GG	TT	GG	_	_	_
17._ICS_16	_	CC	_	CC	AA	GG	_	AC	GG	TT	GG	_	_	_
18._ICS_16	_	CC	_	CC	AA	GG	_	AC	GG	TT	GG	_	_	_
19._ICS_16	_	CC	_	CC	AA	GG	_	AC	GG	TT	GG	_	_	_
20._ICS_16	_	CC	_	CC	AC	GG	_	AC	AG	TT	GT	_	_	_

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	AG	CT	AC	AA	AA	AC	AG	AA	GG	CC	AA	AA	CT	CT
1._GC-08-067-1-89	AG	CT	AC	AA	AA	AC	AG	AA	GG	CC	AA	AA	CT	CT
2._GC-08-067-1-89	AG	CT	AC	AA	AA	AC	AG	AA	GG	CC	AA	AA	CT	CT
3._GC-08-067-1-89	AG	CT	AC	AA	AA	AC	AG	AA	GG	CC	AA	AA	CT	CT
4._GC-08-067-1-89	AG	CT	AC	AA	AA	AC	AG	AA	GG	CC	AA	AA	CT	CT
5._GC-08-067-1-89	AG	CT	AC	AA	AA	AC	AG	AA	GG	CC	AA	AA	CT	CT
6._GC-08-067-1-89	AG	CT	AC	AA	AA	AC	AG	AA	GG	CC	AA	AA	CT	CT
7._GC-08-067-1-89	AG	CT	AC	AA	AA	AC	AG	AA	GG	CC	AA	AA	CT	CT
8._GC-08-067-1-89	AG	CT	AC	AA	AA	AC	AG	AA	GG	CC	AA	AA	CT	CT
9._GC-08-067-1-89	AG	CT	AC	AA	AA	AC	AG	AA	GG	CC	AA	AA	CT	CT
10._ICS_16	AG	CT	_	_	_	_	_	AA	GG	_	_	_	CT	CT
11._ICS_16	AG	CT	_	_	_	_	_	AA	GG	_	_	_	CT	CT
12._ICS_16	AG	CT	_	_	_	_	_	AA	GG	_	_	_	CT	CT
13._ICS_16	AG	CT	_	_	_	_	_	AA	GG	_	_	_	CT	CT
14._ICS_16	AG	CT	_	_	_	_	_	AA	GG	_	_	_	CT	CT
15._ICS_16	AG	CT	_	_	_	_	_	AA	GG	_	_	_	CT	CT
16._ICS_16	AG	CT	_	_	_	_	_	AA	GG	_	_	_	CT	CT
17._ICS_16	AG	CT	_	_	_	_	_	AA	GG	_	_	_	CT	CT
18._ICS_16	AG	CT	_	_	_	_	_	AA	GG	_	_	_	CT	CT
19._ICS_16	AG	CT	_	_	_	_	_	AA	GG	_	_	_	CT	CT
20._ICS_16	GG	TT	_	_	_	_	_	CC	GG	_	_	_	TT	CT

	85	86	87	88	89	90	91	92	93
_Input profile	CC	CT	AG	CT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X
1._GC-08-067-1-89	CC	CT	AG	CT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X
2._GC-08-067-1-89	CC	CT	AG	CT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X
3._GC-08-067-1-89	CC	CT	AG	CT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X
4._GC-08-067-1-89	CC	CT	AG	CT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X
5._GC-08-067-1-89	CC	CT	AG	CT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X
6._GC-08-067-1-89	CC	CT	AG	CT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X
7._GC-08-067-1-89	CC	CT	AG	CT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X
8._GC-08-067-1-89	CC	CT	AG	CT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X
9._GC-08-067-1-89	CC	CT	AG	CT	_	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X
10._ICS_16	CC	_	AG	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
11._ICS_16	CC	_	AG	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
12._ICS_16	CC	_	AG	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
13._ICS_16	CC	_	AG	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
14._ICS_16	CC	_	AG	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
15._ICS_16	CC	_	AG	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
16._ICS_16	CC	_	AG	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
17._ICS_16	CC	_	AG	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
18._ICS_16	CC	_	AG	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
19._ICS_16	CC	_	AG	_	_	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
20._ICS_16	TT	_	AG	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X

Input profile: ICS_16 GC-08-067-1-89

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

1._ICS_16 GC-08-067-1-89

identical
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

2._ICS_16 GC-08-067-1-89

identical
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

3._ICS_16 GC-08-067-1-89

identical
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

4._ICS_16 GC-08-067-1-89

identical
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP4

5._ICS_16 GC-08-067-1-89

identical
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP3

6._ICS_16 GC-08-067-1-89

identical
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

7._ICS_16 GC-08-067-1-89

identical
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

8._ICS_16 GC-08-067-1-89

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

9._ICS_16 GC-08-067-1-89

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9 > FP2

10._ICS_16

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8189 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

11._ICS_16

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8189 6

Dapeng Zhang, 2016

12._ICS_16

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8189 7

Dapeng Zhang, 2016

13._ICS_16

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8189 8

Dapeng Zhang, 2016

14._ICS_16

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8189 10

Dapeng Zhang, 2016

15._ICS_16

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8189 12

Dapeng Zhang, 2016

16._ICS_16

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8189 1 > FP

Dapeng Zhang, 2016

17._ICS_16

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8189 3 > FP

Dapeng Zhang, 2016

18._ICS_16

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8189 5 > FP

Dapeng Zhang, 2016

19._ICS_16

identical
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8189 9 > FP

Dapeng Zhang, 2016

20._ICS_16

65.4 %
39 shared markers

View View all Clone Any

Malaysian Cocoa Board (MCB), Malaysia

Location: Row 1 C0199 2A

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP1350	3	TcSNP534	4	TcSNP591	5	TcSNP42
6	TcSNP418	7	TcSNP702	8	TcSNP1096	9	TcSNP1060	10	TcSNP1165
11	TcSNP429	12	TcSNP75	13	TcSNP891	14	TcSNP122	15	TcSNP316
16	TcSNP521	17	TcSNP860	18	TcSNP1062	19	TcSNP836	20	TcSNP878
21	TcSNP413	22	TcSNP653	23	TcSNP1149	24	TcSNP174	25	TcSNP32
26	TcSNP372	27	TcSNP448	28	TcSNP872	29	TcSNP953	30	TcSNP1034
31	TcSNP1175	32	TcSNP1111	33	TcSNP577	34	TcSNP90	35	TcSNP998
36	TcSNP150	37	TcSNP28	38	TcSNP751	39	TcSNP1484	40	TcSNP602
41	TcSNP561	42	TcSNP894	43	TcSNP1063	44	TcSNP1126	45	TcSNP1270
46	TcSNP606	47	TcSNP329	48	TcSNP689	49	TcSNP944	50	TcSNP1242
51	TcSNP1383	52	TcSNP547	53	TcSNP776	54	TcSNP1309	55	TcSNP151
56	TcSNP1520	57	TcSNP799	58	TcSNP226	59	TcSNP1439	60	TcSNP1442
61	TcSNP193	62	TcSNP25	63	TcSNP364	64	TcSNP144	65	TcSNP230
66	TcSNP560	67	TcSNP723	68	TcSNP731	69	TcSNP701	70	TcSNP1041
71	TcSNP645	72	TcSNP917	73	Tcm003s01336581	74	Tcm003s07402719	75	Tcm001s00947643
76	Tcm006s26664133	77	Tcm002s20575712	78	TcSNP529	79	TcSNP1458	80	TcSNP60
81	TcSNP430	82	TcSNP823	83	TcSNP619	84	TcSNP994	85	TcSNP1144
86	TcSNP1156	87	TcSNP469	88	TcSNP999	89	TcSNP242	90	TcSNP1253
91	TcSNP1414	92	TcSNP154	93	TcSNP240